Ontologies and Vocabularies Used in the Current VFB Release
The external ontologies and controlled vocabulary terms used to create VFB.
These are mostly open source projects and contributions are welcome. VFB actively maintains FBbt, FBcv, dpo and FBdv and contributes to FlyBase and RO.
VFB Image Ontology
The VFB query system relies on representation of data/knowledge in OWL. Central to this a representation of Drosophila …
Datasets
Here is a list of all available datasets available on Virtual Fly Brain (VFB).
Drosophila Anatomy Ontology
An ontology of Drosophila melanogaster anatomy.
FlyBase
FlyBase: a database for drosophila genetics and molecular biology.
FlyBase Developmental Ontology
An ontology of Drosophila melanogaster developmental stages.
FlyBase Controlled Vocabulary
A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.
Gene Ontology
The Gene Ontology (GO) provides a framework and set of concepts for describing the functions of gene products from all organisms.
Sequence types and features ontology
A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of …
GENO ontology
GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental …
Information Artifact Ontology
The Information Artifact Ontology (IAO) is an ontology of information entities, originally driven by work by the OBI digital …
Phenotype And Trait Ontology
An ontology of phenotypic qualities (properties, attributes or characteristics).
Basic Formal Ontology
The upper level ontology upon which OBO Foundry ontologies are built.
Common Anatomy Reference Ontology
An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species.
Ontology for Biomedical Investigations
The Ontology for Biomedical Investigations (OBI) is build in a collaborative, international effort and will serve as a resource …
Population and Community Ontology
The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of …
Relations Ontology
The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of …
Uber-anatomy Ontology
Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional …
NCBI organismal classification
An ontology representation of the NCBI organismal taxonomy.
Biological Imaging Methods Ontology
A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.
Drosophila Phenotype Ontology
An ontology for the description of Drosophila melanogaster phenotypes.
C elegans Phenotype Ontology
Ontology about C. elegans and other nematode phenotypes.
Zebrafish Phenotype Ontology
The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.
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