photoreceptor cell R7 of pale ommatidium [FBbt_02000006]
Photoreceptor cell R7 that is part of a pale ommatidium and expresses Rhodopsin 3 (Wernet and Desplan, 2004). It outputs to Dm8 neurons in medulla layer M6 (Gao et al., 2008; Sancer et al., 2019). It receives synaptic input from photoreceptor cell R8 of the same column (Takemura et al., 2008; Takemura et al., 2015), mostly in M3 (Takemura et al., 2008). Connectivity to Dm8 based on EM data (Gao et al., 2008). Connectivity with R8 based on EM data (Takemura et al., 2008; Takemura et al., 2015).
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen photoreceptor cell R7 of pale ommatidium in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/FBbt_02000006",
"symbol": "",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Class",
"Nervous_system",
"Neuron",
"Sensory_neuron"
],
"short_form": "FBbt_02000006",
"label": "photoreceptor cell R7 of pale ommatidium"
},
"description": [
"Photoreceptor cell R7 that is part of a pale ommatidium and expresses Rhodopsin 3 (Wernet and Desplan, 2004). It outputs to Dm8 neurons in medulla layer M6 (Gao et al., 2008; Sancer et al., 2019). It receives synaptic input from photoreceptor cell R8 of the same column (Takemura et al., 2008; Takemura et al., 2015), mostly in M3 (Takemura et al., 2008)."
],
"comment": [
"Connectivity to Dm8 based on EM data (Gao et al., 2008). Connectivity with R8 based on EM data (Takemura et al., 2008; Takemura et al., 2015)."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "R7",
"iri": "http://purl.obolibrary.org/obo/FBbt_00004225",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Class",
"Nervous_system",
"Neuron",
"Sensory_neuron"
],
"short_form": "FBbt_00004225",
"label": "photoreceptor cell R7"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013009",
"label": "sends_synaptic_output_to_cell",
"type": "sends_synaptic_output_to_cell"
},
"object": {
"symbol": "Dm8",
"iri": "http://purl.obolibrary.org/obo/FBbt_00013774",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Class",
"Glutamatergic",
"Nervous_system",
"Neuron"
],
"short_form": "FBbt_00013774",
"label": "distal medullary amacrine neuron Dm8"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013002",
"label": "receives synaptic input in region",
"type": "receives_synaptic_input_in_region"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003752",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_subdomain"
],
"short_form": "FBbt_00003752",
"label": "medulla layer M3"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013008",
"label": "receives synaptic input from neuron",
"type": "receives_synaptic_input_from_neuron"
},
"object": {
"symbol": "R8",
"iri": "http://purl.obolibrary.org/obo/FBbt_00004227",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Cholinergic",
"Class",
"Nervous_system",
"Neuron",
"Sensory_neuron"
],
"short_form": "FBbt_00004227",
"label": "photoreceptor cell R8"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/BFO_0000050",
"label": "is part of",
"type": "part_of"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_02000002",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Sense_organ"
],
"short_form": "FBbt_02000002",
"label": "pale ommatidium"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0002292",
"label": "expresses",
"type": "expresses"
},
"object": {
"symbol": "",
"iri": "http://flybase.org/reports/FBgn0003249",
"types": [
"Entity",
"Class"
],
"short_form": "FBgn0003249",
"label": "Rh3"
}
}
],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "pR7",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0232800",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0232800",
"label": "Jukam et al., 2016, Development 143(13): 2389--2397"
},
"FlyBase": "",
"PubMed": "27226322",
"DOI": "10.1242/dev.134700"
}
}
],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0180690",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0180690",
"label": "Wernet and Desplan, 2004, Trends Cell Biol. 14(10): 576--584"
},
"FlyBase": "",
"PubMed": "15450980",
"DOI": "10.1016/j.tcb.2004.09.007"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0243430",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0243430",
"label": "Sancer et al., 2019, Curr. Biol. 29(17): 2812--2825.e4"
},
"FlyBase": "",
"PubMed": "31402302",
"DOI": "10.1016/j.cub.2019.07.020"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0206213",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0206213",
"label": "Gao et al., 2008, Neuron 60(2): 328--342"
},
"FlyBase": "",
"PubMed": "18957224",
"DOI": "10.1016/j.neuron.2008.08.010"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0205531",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0205531",
"label": "Takemura et al., 2008, J. Comp. Neurol. 509(5): 493--513"
},
"FlyBase": "",
"PubMed": "18537121",
"DOI": "10.1002/cne.21757"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0230092",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0230092",
"label": "Takemura et al., 2015, Proc. Natl. Acad. Sci. U.S.A. 112(44): 13711--13716"
},
"FlyBase": "",
"PubMed": "26483464",
"DOI": "10.1073/pnas.1509820112"
}
]
}
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.