transmedullary neuron Tm1 [FBbt_00003789]
Transmedullary narrow field neuron that terminates in lobula layer 1 with a bleb-type terminal arborization and that has fine arborizations in medulla layer M2 and bleb-type arborizations in M3 and M9 (Fischbach and Dittrich, 1989; Takemura et al., 2011). In the medulla, it receives strong synaptic input from lamina monopolar neuron L2 (Takemura et al., 2011; Takemura et al., 2013). It outputs onto T neuron T5 (Shinomiya et al., 2019). It is a cholinergic neuron (Varija Raghu et al., 2011; Shinomiya et al., 2014). The neurotransmitter was assessed by co-labelling cells with a P{Cha-GAL4.7.4} driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011; Shinomiya et al., 2014). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Connectivity in the medulla was extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008) or from 7 columns (Takemura et al., 2013). Connectivity in the lobula was assessed by serial section electron microscopy of a single column (Shinomiya et al., 2014). Connectivity in the entire optic lobe was also assessed by EM (Shinomiya et al., 2019).
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerOpen transmedullary neuron Tm1 in VFB
VFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/FBbt_00003789",
"symbol": "Tm1",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Cholinergic",
"Class",
"Nervous_system",
"Neuron"
],
"short_form": "FBbt_00003789",
"label": "transmedullary neuron Tm1"
},
"description": [
"Transmedullary narrow field neuron that terminates in lobula layer 1 with a bleb-type terminal arborization and that has fine arborizations in medulla layer M2 and bleb-type arborizations in M3 and M9 (Fischbach and Dittrich, 1989; Takemura et al., 2011). In the medulla, it receives strong synaptic input from lamina monopolar neuron L2 (Takemura et al., 2011; Takemura et al., 2013). It outputs onto T neuron T5 (Shinomiya et al., 2019). It is a cholinergic neuron (Varija Raghu et al., 2011; Shinomiya et al., 2014)."
],
"comment": [
"The neurotransmitter was assessed by co-labelling cells with a P{Cha-GAL4.7.4} driver [FBtp0014830] and an anti-ChAT antibody (Varija Raghu et al., 2011; Shinomiya et al., 2014). Pre- versus postsynaptic innervation judged by scoring of terminal morphology from figures in Fischbach and Dittrich (1989) as assessed by FlyBrain Neuron DB. Connectivity in the medulla was extrapolated from serial EM of 3 columns from a single sample (Takemura et al., 2008) or from 7 columns (Takemura et al., 2013). Connectivity in the lobula was assessed by serial section electron microscopy of a single column (Shinomiya et al., 2014). Connectivity in the entire optic lobe was also assessed by EM (Shinomiya et al., 2019)."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00058205",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Cholinergic",
"Class",
"Nervous_system",
"Neuron"
],
"short_form": "FBbt_00058205",
"label": "adult cholinergic neuron"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00013789",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Class",
"Nervous_system",
"Neuron"
],
"short_form": "FBbt_00013789",
"label": "narrow field transmedullary neuron"
}
],
"relationships": [
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013003",
"label": "sends_synaptic_output_to_region",
"type": "sends_synaptic_output_to_region"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003752",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_subdomain"
],
"short_form": "FBbt_00003752",
"label": "medulla layer M3"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013003",
"label": "sends_synaptic_output_to_region",
"type": "sends_synaptic_output_to_region"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003853",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_subdomain"
],
"short_form": "FBbt_00003853",
"label": "lobula layer 1"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013003",
"label": "sends_synaptic_output_to_region",
"type": "sends_synaptic_output_to_region"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003759",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_subdomain"
],
"short_form": "FBbt_00003759",
"label": "medulla layer M9"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013009",
"label": "sends_synaptic_output_to_cell",
"type": "sends_synaptic_output_to_cell"
},
"object": {
"symbol": "T5",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003736",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Cholinergic",
"Class",
"Nervous_system",
"Neuron"
],
"short_form": "FBbt_00003736",
"label": "T neuron T5"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013002",
"label": "receives synaptic input in region",
"type": "receives_synaptic_input_in_region"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003752",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_subdomain"
],
"short_form": "FBbt_00003752",
"label": "medulla layer M3"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013002",
"label": "receives synaptic input in region",
"type": "receives_synaptic_input_in_region"
},
"object": {
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003751",
"types": [
"Entity",
"Adult",
"Anatomy",
"Class",
"Nervous_system",
"Synaptic_neuropil",
"Synaptic_neuropil_subdomain"
],
"short_form": "FBbt_00003751",
"label": "medulla layer M2"
}
},
{
"relation": {
"iri": "http://purl.obolibrary.org/obo/RO_0013008",
"label": "receives synaptic input from neuron",
"type": "receives_synaptic_input_from_neuron"
},
"object": {
"symbol": "L2",
"iri": "http://purl.obolibrary.org/obo/FBbt_00003720",
"types": [
"Entity",
"Adult",
"Anatomy",
"Cell",
"Cholinergic",
"Class",
"Nervous_system",
"Neuron"
],
"short_form": "FBbt_00003720",
"label": "lamina monopolar neuron L2"
}
}
],
"xrefs": [
{
"link_base": "https://flybrain-ndb.virtualflybrain.org/neuronrec-",
"site": {
"symbol": "",
"iri": "http://virtualflybrain.org/reports/FlyBrain_NDB",
"types": [
"Entity",
"Individual",
"Site"
],
"short_form": "FlyBrain_NDB",
"label": "FlyBrain NeuronDB"
},
"is_data_source": false,
"link_postfix": [
".html"
],
"icon": "http://flybrain-ndb.virtualflybrain.org/NDB_title260.gif",
"accession": "10132",
"link_text": "transmedullary neuron Tm1 on FlyBrain NeuronDB",
"homepage": "https://flybrain-ndb.virtualflybrain.org"
}
],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "Tm1",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0217052",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0217052",
"label": "Takemura et al., 2011, Curr. Biol. 21(24): 2077--2084"
},
"FlyBase": "",
"PubMed": "22137471",
"DOI": "10.1016/j.cub.2011.10.053"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0225094",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0225094",
"label": "Shinomiya et al., 2014, Curr. Biol. 24(10): 1062--1070"
},
"FlyBase": "",
"PubMed": "24768048",
"DOI": "10.1016/j.cub.2014.03.051"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0222324",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0222324",
"label": "Takemura et al., 2013, Nature 500(7461): 175--181"
},
"FlyBase": "",
"PubMed": "23925240",
"DOI": "10.1038/nature12450"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0204652",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0204652",
"label": "Morante and Desplan, 2008, Curr. Biol. 18(8): 553--565"
},
"FlyBase": "",
"PubMed": "18403201",
"DOI": "10.1016/j.cub.2008.02.075"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0241236",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0241236",
"label": "Shinomiya et al., 2019, eLife 8: e40025"
},
"FlyBase": "",
"PubMed": "30624205",
"DOI": "10.7554/eLife.40025"
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0049410",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0049410",
"label": "Fischbach and Dittrich, 1989, Cell Tissue Res. 258(3): 441--475"
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
},
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/FBrf0212356",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "FBrf0212356",
"label": "Varija Raghu et al., 2011, J. Comp. Neurol. 519(1): 162--176"
},
"FlyBase": "",
"PubMed": "21120933",
"DOI": "10.1002/cne.22512"
}
]
}
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.