[confocal microscopy; Adult Brain fru clones (Cachero2010); JRC2018Unisex; Cachero et al., 2010, Curr. Biol. 20(18): 1589–1601; pSG-d_M clone of Cachero 2010; adult brain template JFRC2; aIP-a_M clone of Cachero 2010; aDT-f_M clone of Cachero 2010]
[ITD haltere tract on adult VNC, JRC2018VU; lower tectulum on adult VNC, JRC2018VU; dorsal median tract on adult VNC, JRC2018VU; JRC2018UnisexVNC; medial ventral association center on adult VNC, JRC2018VU; Adult VNC neuropils (Court2020); Court et al., 2017; adult prothoracic neuromere on adult VNC, JRC2018VU; computer graphic]
[accessory prothoracic nerve on adult VNS template, Court2018; adult accessory mesothoracic neuromere on adult VNS template, Court2018; accessory metathoracic nerve on adult VNS template, Court2018; prothoracic leg nerve on adult VNS template, Court2018; adult VNS template - Court2018; Court et al., 2017; Adult VNS neuropils (Court2017); accessory mesothoracic nerve on adult VNS template, Court2018; computer graphic]
[confocal microscopy; AMMC local and projection neurons (Matsuo2016); AMMC-A1; Bi7; JRC2018Unisex; Matsuo et al., 2016, J. Comp. Neurol. 524(6): 1099–1164; adult brain template JFRC2; Bb4]
Biomechanical origins of proprioceptive maps in the Drosophila leg (Mamiya et al. 2022)
[Ito et al., 2014, Neuron 81(4): 755–765; wedge commissure on adult brain template Ito2014; adult antennal lobe on adult brain template Ito2014; epaulette on adult brain template Ito2014; medial cerebro-cervical fascicle on adult brain template Ito2014; superior medial protocerebrum on adult brain template Ito2014; BrainName neuropils and tracts - Ito half-brain; computer graphic]
[Ito et al., 2014, Neuron 81(4): 755–765; pedunculus of adult mushroom body on adult brain template JFRC2; lateral horn on adult brain template JFRC2; superior neuropils on adult brain template JFRC2; BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya); superior clamp on adult brain template JFRC2; central body on adult brain template JFRC2; computer graphic]
[Knowles-Barley et al., 2010, Database (Oxford) 2010: baq005; confocal microscopy; FBti0143529; FBti0143596; JRC2018Unisex; adult brain template JFRC2; BrainTrap lines (Knowles-Barley2010); FBti0143647]
A catalogue of single neuron images covering 18 central brain lineages.
A catalogue of single neuron images covering 18 central brain lineages.
L1 EM reconstructed neurons from Valdes-Aleman et al. 2021
[confocal microscopy; Tirian & Dickson, 2017; VDRC_VT019992_LexAGAD_attP2_2; JRC2018Unisex; Dickson lab VT line collection - VDRC images; VDRC_VT014966_LexAGAD_attP40_1; adult brain template JFRC2; VDRC_VT019746_GAL4_attP2_1]
[confocal microscopy; Tirian & Dickson, 2017; VT017250 GAL4 in the Adult Brain Dickson2017; Dickson lab VT lines - FlyLight/Janelia images (2017); JRC2018Unisex; VDRC; VT014430 GAL4 in the Adult VNC Dickson2017; adult VNS template - Court2018; adult brain template JFRC2; VT012791 GAL4 in the Adult Brain Dickson2017]
FAFB EM reconstructed neurons from Baltruschat et al 2021
FAFB EM reconstructed neurons from Bates and Schlegel et al 2020
FAFB EM reconstructed neurons from Coates et al 2020
FAFB EM reconstructed neurons from Dolan and Belliart-Guerin et al. 2018
FAFB EM reconstructed neurons from Dolan et al. 2019
FAFB EM reconstructed neurons from Engert et al 2022
FAFB EM reconstructed neurons from Felsenberg et al 2018
FAFB EM reconstructed neurons from Gorko et al 2024
FAFB EM reconstructed neurons from Hampel and Eichler et al 2020
FAFB EM reconstructed neurons from Kim et al 2020
FAFB EM reconstructed neurons from Kind et al. 2021
FAFB EM reconstructed neurons from Marin et al 2020
FAFB EM reconstructed neurons from Morimoto et al 2020
FAFB EM reconstructed neurons from Otto et al 2020
FAFB EM reconstructed neurons from Sayin et al 2019
FAFB EM reconstructed neurons from Shiu et al 2022
FAFB EM reconstructed neurons from Taisz and Galili et al., 2022
FAFB EM reconstructed neurons from Turner-Evans et al 2020
FAFB EM reconstructed neurons from Wang et al 2020a
FAFB EM reconstructed neurons from Wang et al 2020b
FAFB EM reconstructed neurons from Wang et al 2020c
FAFB EM reconstructed neurons from Zhao et al., 2023
FAFB EM reconstructed neurons from Zheng et al 2018
FAFB EM reconstructed neurons from Zheng et al 2020
FANC EM reconstructed neurons from Maniates-Selvin et al 2020
L1 EM reconstructed neurons from Andrade et al 2019
L1 EM reconstructed neurons from Barnes et al., 2022
L1 EM reconstructed neurons from Carreira-Rosario, Arzan Zarin, Clark et al. 2018
L1 EM reconstructed neurons from Eschbach et al 2020
L1 EM reconstructed neurons from Eschbach et al 2020b
L1 EM reconstructed neurons from Imambocus et al., 2022
L1 EM reconstructed neurons from Jovanic et al. 2019
L1 EM reconstructed neurons from Mark et al. 2019
L1 EM reconstructed neurons from Miroschnikow et al. 2018
L1 EM reconstructed neurons from Tastekin et al 2018
L1 EM reconstructed neurons from Winding, Pedigo et al., 2023
L1 EM reconstructed neurons from Zarin, Mark et al. 2019
Heckscher et al. 2015
[FlyCircuit 1.0 - single neurons (Chiang2010); confocal microscopy; Chiang et al., 2011, Curr. Biol. 21(1): 1–11; JRC2018Unisex; fru-M-300260; adult brain template JFRC2; VGlut-F-800195; TH-M-300024]
[confocal microscopy; JRC_R77A11_GAL4_VNC_20100414; JRC_R32G08_GAL4_VNC_20090516; JRC_R64F03_GAL4_Brain_20100202; Jenett et al., 2012, Cell Rep. 2(4): 991–1001; JRC2018UnisexVNC; JRC_R81F04_GAL4_Brain_20101201; JRC2018Unisex; FlyLight - Gen1 GAL4/LexA collection (exported 2019); JRC_R21F02_lexA_Brain_20110513]
[JRC_R9A09 GAL4 in the adult brain; confocal microscopy; JRC_R19E06 GAL4 in the adult brain; Jenett et al., 2012, Cell Rep. 2(4): 991–1001; JRC2018Unisex; adult brain template JFRC2; JRC_R13F02 GAL4 in the adult brain; FlyLight - GMR GAL4 collection (Jenett2012)]
FlyLight split-GAL4 lines for Lateral Horn from Dolan et al. 2019
FlyLight split-GAL4 lines for Lateral Horn from Dolan et al. 2019
FlyWire Full Adult Female Brain (FAFB) connectome. Includes neuron skeletons, meshes and their synaptic connectivity
GAL4 Split expression patterns from Dolan et al. 2019
Images of grooming neurons and split GAL4 line drivers.
Images of grooming neurons and split GAL4 line drivers.
Images of aSP22 descending neuron from McKellar et al., 2019
Images of proboscis muscles from McKellar et al., 2020
An exhaustive set of lineage clones covering the adult brain from Kei Ito’s lab.
JRC2018 templates with regions of interest painted by Kazunori Shinomiya
Version 1.0.1 of reconstruction JRC_FlyEM_Hemibrain neurons and their synaptic connectivity
Version 1.1 of reconstruction JRC_FlyEM_Hemibrain neurons and their synaptic connectivity
Synapse segmentation and regions of interest on JRC_FlyEM_Hemibrain
Template image by James W. Truman and the Fly Light Project Team at HHMI Janelia Research Campus.
[right centromedial neuropil of T2 on L3 CNS template, Wood2018; left centrolateral neuropil of T1 on L3 CNS template, Wood2018; right centromedial neuropil of A1 on L3 CNS template, Wood2018; L3 CNS template - Wood2018; right ventrolateral neuropil of maxillary segment on L3 CNS template, Wood2018; L3 neuropils (WoodHartenstein2018); computer graphic; right centrolateral neuropil of A4 on L3 CNS template, Wood2018]
Schlegel et al. 2016
Eichler, Li, Litwin-Kumar et al. 2017
Zwart et al. 2016
Berck, Khandelwal et al. 2016
Fushiki et al. 2016
Jovanic, Schneider-Mizell et al. 2016
Larderet, Fritsch et al. 2017
Takagi et al. 2017
An exhaustive set of lineage clones covering the adult brain from Tzumin Lee’s lab.
Simultaneous activation of parallel sensory pathways promotes a grooming sequence in Drosophila
Version 1.0 of the Male Adult Nerve Cord (MANC) connectome. Includes neuron skeletons, meshes and their synaptic connectivity
[MBONs and split-GAL4 lines that target them (Aso2014); confocal microscopy; JRC_MB047B_Brain_2020__5; JRC_MB043B_VNC_2020__6; JRC2018UnisexVNC; JRC2018Unisex; JRC_MB065B_VNC_2020__2; adult brain template JFRC2; MBON-02 of Aso 2014; Aso et al., 2014, eLife 3: e04577]
MCFO images of GMR-GAL4 lines from Dionne et al., 2018
MCFO images of GMR-GAL4 lines from Jenett et al., 2012
MCFO images of GMR-GAL4 lines from Pfeiffer et al., 2010
MCFO images of VT-GAL4 lines from Tirian et al., 2017
Millimeter-scale imaging of a Drosophila leg at single-neuron resolution from Dense neuronal reconstruction through X-ray holographic nano-tomography (Kuan et al. 2020)
Version 3 NBLAST clustering of FlyCircuit 1.0 neurons
single example of pIP10 neuron in adult CNS
Ohyama, Schneider-Mizell et al. 2015
Gerhard et al. 2017
Burgos et al 2018
Optic Lobe connectome neurons from optic_lobe:v1.0.1, Nern et al., 2024. Includes neuron skeletons, meshes and their synaptic connectivity. These optic lobe neurons are traced from part of the Male CNS EM volume
[Davie et al., 2018, Cell 174(4): 982–998.e20; CC-BY_4.0; EMBL-EBI Single Cell Expression Atlas; scRNAseq_2018_Davie]
[Brunet Avalos et al., 2019, eLife 8: e50354; scRNAseq_2019_Avalos; CC-BY_4.0; EMBL-EBI Single Cell Expression Atlas]
[EMBL-EBI Single Cell Expression Atlas; Allen et al., 2020, eLife 9: e54074; CC-BY_4.0; scRNAseq_2020_Allen]
[Baker et al., 2021, Genome Res. 31(10): 1927–1937; scRNAseq_2021_Maker_COCA; CC-BY_4.0; EMBL-EBI Single Cell Expression Atlas]
[Baker et al., 2021, Genome Res. 31(10): 1927–1937; scRNAseq_2021_Maker_CTRL; CC-BY_4.0; EMBL-EBI Single Cell Expression Atlas]
[CC-BY_4.0; Mokashi et al., 2021, Front. Psychiatry 12: 699033; scRNAseq_2021_Mokashi_CTRL; EMBL-EBI Single Cell Expression Atlas]
[scRNAseq_2021_Mokashi_ETH; Mokashi et al., 2021, Front. Psychiatry 12: 699033; CC-BY_4.0; EMBL-EBI Single Cell Expression Atlas]
[scRNAseq_2021_Ozel; CC-BY_4.0; EMBL-EBI Single Cell Expression Atlas; Özel et al., 2021, Nature 589(7840): 88–95]
[scRNAseq_2022_FCA_FEMALE; EMBL-EBI Single Cell Expression Atlas]
[scRNAseq_2022_FCA_MALE; EMBL-EBI Single Cell Expression Atlas]
[scRNAseq_2022_FCA_MIXED; EMBL-EBI Single Cell Expression Atlas]
[P{R55C10-GAL4.DBD} ∩ P{ple-p65.AD.TH-D} expression pattern of Xie2018; confocal microscopy; P{R55C10-GAL4.DBD} ∩ P{DAT-B-p65.AD} expression pattern of Xie2018; P{R76F05-GAL4.DBD} ∩ P{ple-p65.AD.TH-F} expression pattern of Xie2018; JRC2018Unisex; Xie et al., 2018, Cell Rep. 23(2): 652–665; adult brain template JFRC2; Split GAL4 lines for dopaminergic neurons, Xie2018]
split-GAL4 lines for Ellipsoid Body neurons from the (walking-more) brain-behavior map
Descending sensory-motor pathways in adult CNS
Descending sensory-motor pathways in adult CNS
For comparison of the properties of memories formed by optogenetic activation of individual DAN cell types
For comparison of the properties of memories formed by optogenetic activation of individual DAN cell types
split-GAL4 lines for Ellipsoid Body neurons from the (walking-more) brain-behavior map
split-GAL4 lines for the Lobula Columnar (LC) visual projection neurons (LC Paper)
split-GAL4 lines for the Lobula Columnar (LC) visual projection neurons (LC Paper)
Split-GAL4 lines from Baker et al., 2022
Split-GAL4 lines used in the evaluation of JRC2018 templates from Bogovic et al., 2020
Split-GAL4 lines from Cheong et al., 2023
Split-GAL4 lines from Cheong et al., 2024
Split-GAL4 lines from Davis et al 2020
Split-GAL4 lines from Ehrhardt et al., 2023
Split-GAL4 lines from Feng et al., 2014
Split-GAL4 lines labelling neurons downstream of Moonwalker Descending Neurons from Feng et al., 2020
Split-GAL4 lines labelling PPM3 cluster subset neurons from Gao et al., 2019
Split-GAL4 lines from Garner et al., 2023
Split-GAL4 lines from Giraldoet al 2018
Split-GAL4 lines labelling Mushroom Body neurons from Hattori et al 2017
Split-GAL4 lines from Isaacson et al., 2023
Split-GAL4 lines from Jovanic et al., 2019
Split-GAL4 lines labelling R7 and R8 photoreceptor target neurons from Kind et al., 2021
Split-GAL4 lines used for the characterization of LPLC2 anatomy and function
Split-GAL4 lines used for the characterization of LPLC2 anatomy and function
Split-GAL4 lines labelling neurons for the characterization of a functionally ordered visual feature map from Klapoetke et al., 2022
Split-GAL4 lines from Liang et al., 2017
Split-GAL4 lines from Longden et al., 2023
Split-GAL4 lines from Masek et al., 2015
Split-GAL4 lines labelling proboscis muscle motor neurons from McKellar et al 2020
Split-GAL4 lines from Meissner et al., 2024
Split-GAL4 lines from Minegishi et al., 2023
Split-GAL4 lines from Montague et al., 2019
Split-GAL4 lines from Morimoto et al., 2020
Split-GAL4 lines labelling descending neurons for flight control from Namiki et al., 2022
Split-GAL4 lines labelling doublesex-expressing single neuronal clusters or neurons in the brain of both males and females from Nojima et al, 2021
Split-GAL4 lines from Reyn et al., 2017
Split-GAL4 lines from Rubin et al., 2024
Split-GAL4 lines from Schlichting et al., 2019
Split-GAL4 lines from Schretter et al 2020
Split-GAL4 lines from Shuai et al., 2023
Split-GAL4 lines from Sitaraman et al., 2015
Split-GAL4 lines labelling adult subesophageal zone neurons from Sterne et al., 2021
Split-GAL4 lines from Takagi et al., 2017
Split-GAL4 lines from Takemura et al., 2017
Split-GAL4 lines from Tanaka et al., 2008
Split-GAL4 lines from Davis et al 2017
Split-GAL4 lines from Turner_Evans et al 2017
Split-GAL4 lines from Turner_Evans et al 2020
Split-GAL4 lines from Tuthill et al., 2013
Split-GAL4 lines from Vijayan et al., 2023
Split-GAL4 lines from Vogt et al., 2014
Split-GAL4 lines from Vogt et al., 2016
Split-GAL4 lines from Wang et al 2020
Split-GAL4 lines from Wang et al 2020b
Split-GAL4 lines labelling neurons that implement sexual receptivity decisions in Drosophila females from Wang et al., 2020c
Split-GAL4 lines from Xie et al., 2021
Split-GAL4 lines from Yamagata et al., 2015
Split-GAL4 lines from Zhao et al., 2023
[JRC_SS52267_Brain_2020__1; confocal microscopy; JRC_SS00098_VNC_2020__1; Wolff and Rubin, 2018, J. Comp. Neurol. 526(16): 2585–2611; JRC_SS25983_Brain_2020__1; Splits targetting CX neurons, Wolff2018; JRC_SS50417_VNC_2020__1; JRC2018UnisexVNC; JRC_SS00190_VNC_2020__1]
[confocal microscopy; Wolff and Rubin, 2018, J. Comp. Neurol. 526(16): 2585–2611; JRC_SS54295_Brain_2018_20180320_32_I2_20x; Splits targetting CX neurons, Wolff2018; JRC_SS50417_Brain_2018_20180320_32_A3_20x; JRC_SS00081_Brain_2018_20160122_43_C5_20x; JRC2018Unisex; JRC_SS52577_Brain_2018_20180320_32_G2_20x; JRC_SS25983_Brain_2018_20160212_44_C4_20x]
[confocal microscopy; JRC_SS01601_VNC_2020__1; JRC_SS00734_VNC_2020__1; Splits targetting the visual motion pathway, Strother2017; JRC_SS01603_VNC_2020__1; JRC2018UnisexVNC; JRC_SS02260_VNC_2020__1; Strother et al., 2017, Neuron 94(1): 168–182.e10; JRC_SS01574_VNC_2020__1]
[Strother et al., 2017, Neuron 94(1): 168–182.e10; Splits targetting the visual motion pathway, Strother2017]
[confocal microscopy; Third order olfactory neurons involved in pheromone response - backfills (Kohl2013); 121122-2JK1029fill; 120717-4JK1029fill; Kohl et al., 2013, Cell 155(7): 1610–1623; JRC2018Unisex; 120816-JK56fill; adult brain template JFRC2]
A selection of neurons from specimens created by Dr. Jim Truman at Janelia Research Campus using the multicolor flip out technique from the FlyLight GMR lines.
Images by James W. Truman and the Fly Light Project Team at HHMI Janelia Research Campus.
L1 EM reconstructed neurons from Hueckesfeld et al. 2020
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